"CanDo (.cndo) file format version 1.0, Keyao Pan, Laboratory for Computational Biology and Biophysics, Massachusetts Institute of Technology, November 2015" dnaTop,id,up,down,across,seq 1,1,-1,3,2,T 2,2,4,-1,1,A 3,3,1,5,4,G 4,4,6,2,3,C 5,5,3,7,6,C 6,6,8,4,5,G 7,7,5,9,8,A 8,8,10,6,7,T 9,9,7,11,10,A 10,10,12,8,9,T 11,11,9,13,12,T 12,12,14,10,11,A 13,13,11,15,14,C 14,14,16,12,13,G 15,15,13,17,16,C 16,16,47,14,15,G 17,17,15,19,18,T 18,18,20,49,17,A 19,19,17,21,20,G 20,20,22,18,19,C 21,21,19,23,22,A 22,22,24,20,21,T 23,23,21,25,24,G 24,24,26,22,23,C 25,25,23,27,26,C 26,26,28,24,25,G 27,27,25,29,28,A 28,28,30,26,27,T 29,29,27,31,30,C 30,30,32,28,29,G 31,31,29,-1,32,A 32,32,-1,30,31,T 33,33,-1,35,34,T 34,34,36,-1,33,A 35,35,33,37,36,G 36,36,38,34,35,C 37,37,35,39,38,C 38,38,40,36,37,G 39,39,37,41,40,A 40,40,42,38,39,T 41,41,39,43,42,T 42,42,44,40,41,A 43,43,41,45,44,A 44,44,46,42,43,T 45,45,43,47,46,G 46,46,48,44,45,C 47,47,45,16,48,T 48,48,50,46,47,A 49,49,18,51,50,C 50,50,52,48,49,G 51,51,49,53,52,C 52,52,54,50,51,G 53,53,51,55,54,G 54,54,56,52,53,C 55,55,53,57,56,A 56,56,58,54,55,T 57,57,55,59,58,A 58,58,60,56,57,T 59,59,57,61,60,T 60,60,62,58,59,A 61,61,59,63,62,C 62,62,64,60,61,G 63,63,61,-1,64,A 64,64,-1,62,63,T dNode,"e0(1)","e0(2)","e0(3)" 1,-40.872920,2.493298,3.145057 2,-37.472920,2.493298,3.145057 3,-34.072920,2.493298,3.145057 4,-30.672920,2.493298,3.145057 5,-27.272920,2.493298,3.145057 6,-23.872920,2.493298,3.145057 7,-20.472920,2.493298,3.145057 8,-17.072920,2.493298,3.145057 9,-13.672920,2.493298,3.145058 10,-10.272920,2.493298,3.145058 11,-6.872920,2.493298,3.145058 12,-3.472920,2.493298,3.145058 13,-0.072920,2.493298,3.145058 14,3.327080,2.493298,3.145058 15,6.727080,2.493298,3.145058 16,10.127080,2.493298,3.145058 17,-2.622920,24.587987,21.631874 18,-4.322920,21.643501,21.633631 19,-6.022920,18.699015,21.635389 20,-7.722920,15.754529,21.637146 21,-9.422920,12.810043,21.638903 22,-11.122920,9.865557,21.640661 23,-12.822920,6.921072,21.642418 24,-14.522920,3.976586,21.644176 25,-16.222920,1.032100,21.645933 26,-17.922920,-1.912386,21.647691 27,-19.622920,-4.856872,21.649448 28,-21.322920,-7.801358,21.651205 29,-23.022920,-10.745843,21.652962 30,-24.722920,-13.690329,21.654720 31,-26.422920,-16.634815,21.656477 32,-28.122920,-19.579301,21.658234 triad,"e1(1)","e1(2)","e1(3)","e2(1)","e2(2)","e2(3)","e3(1)","e3(2)","e3(3)" 1,-0.000000,0.221939,-0.975061,0.000000,0.975061,0.221939,1.000000,-0.000000,-0.000000 2,-0.000000,0.732646,-0.680610,0.000000,0.680610,0.732646,1.000000,-0.000000,-0.000000 3,-0.000000,0.988742,-0.149632,0.000000,0.149632,0.988742,1.000000,-0.000000,-0.000000 4,0.000000,0.901228,0.433346,0.000000,-0.433346,0.901228,1.000000,-0.000000,-0.000000 5,0.000000,0.500517,0.865727,0.000000,-0.865727,0.500517,1.000000,-0.000000,-0.000000 6,0.000000,-0.074135,0.997248,-0.000000,-0.997248,-0.074135,1.000000,-0.000000,-0.000000 7,0.000000,-0.623023,0.782203,-0.000000,-0.782203,-0.623023,1.000000,-0.000000,-0.000000 8,0.000000,-0.955397,0.295325,-0.000000,-0.295325,-0.955397,1.000000,-0.000000,-0.000000 9,0.000000,-0.955749,-0.294185,0.000000,0.294185,-0.955749,1.000000,0.000000,0.000000 10,0.000000,-0.623956,-0.781459,0.000000,0.781459,-0.623956,1.000000,0.000000,0.000000 11,0.000000,-0.075325,-0.997159,0.000000,0.997159,-0.075325,1.000000,0.000000,0.000000 12,0.000000,0.499483,-0.866324,-0.000000,0.866324,0.499483,1.000000,0.000000,0.000000 13,0.000000,0.900710,-0.434421,-0.000000,0.434421,0.900710,1.000000,0.000000,0.000000 14,-0.000000,0.988920,0.148452,-0.000000,-0.148452,0.988920,1.000000,0.000000,0.000000 15,-0.000000,0.733458,0.679735,-0.000000,-0.679735,0.733458,1.000000,0.000000,0.000000 16,-0.000000,0.223103,0.974795,-0.000000,-0.974795,0.223103,1.000000,0.000000,0.000000 17,-0.192709,0.111842,0.974861,-0.844312,0.487331,-0.222812,-0.500000,-0.866025,0.000517 18,-0.634842,0.366932,0.679954,-0.589047,0.339649,-0.733255,-0.500000,-0.866025,0.000517 19,-0.856353,0.494504,0.148747,-0.129074,0.073931,-0.988875,-0.500000,-0.866025,0.000517 20,-0.780262,0.450225,-0.434153,0.375754,-0.217480,-0.900839,-0.500000,-0.866025,0.000517 21,-0.433013,0.249483,-0.866174,0.750000,-0.433311,-0.499741,-0.500000,-0.866025,0.000517 22,0.064718,-0.037960,-0.997181,0.863604,-0.498557,0.075028,-0.500000,-0.866025,0.000517 23,0.539958,-0.312211,-0.781645,0.677086,-0.390544,0.623723,-0.500000,-0.866025,0.000517 24,0.827550,-0.477962,-0.294470,0.255265,-0.146807,0.955661,-0.500000,-0.866025,0.000517 25,0.827550,-0.477610,0.295040,-0.255265,0.147948,0.955485,-0.500000,-0.866025,0.000517 26,0.539958,-0.311278,0.782017,-0.677086,0.391288,0.623256,-0.500000,-0.866025,0.000517 27,0.064718,-0.036770,0.997226,-0.863604,0.498646,0.074433,-0.500000,-0.866025,0.000517 28,-0.433013,0.250517,0.865876,-0.750000,0.432714,-0.500258,-0.500000,-0.866025,0.000517 29,-0.780262,0.450743,0.433615,-0.375754,0.216404,-0.901098,-0.500000,-0.866025,0.000517 30,-0.856353,0.494326,-0.149337,0.129074,-0.075111,-0.988786,-0.500000,-0.866025,0.000517 31,-0.634842,0.366120,-0.680391,0.589047,-0.340524,-0.732849,-0.500000,-0.866025,0.000517 32,-0.192709,0.110679,-0.974994,0.844312,-0.487597,-0.222230,-0.500000,-0.866025,0.000517 id_nt,id1,id2 1,1,2 2,3,4 3,5,6 4,7,8 5,9,10 6,11,12 7,13,14 8,15,16 9,17,18 10,19,20 11,21,22 12,23,24 13,25,26 14,27,28 15,29,30 16,31,32 17,64,63 18,62,61 19,60,59 20,58,57 21,56,55 22,54,53 23,52,51 24,50,49 25,48,47 26,46,45 27,44,43 28,42,41 29,40,39 30,38,37 31,36,35 32,34,33